more than Running 2 conditions in DeSeq2

Discussion in 'Plugin Development' started by Fabian15, Sep 22, 2021.

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    Fabian15

    I am trying to set up an expression analysis between 3 different sample strains from my RNA-seq experiment that were also taken at 3 different timepoints. I have 3 biological replicates for each, so 27 samples in total. Currently, I can see that I can only run DeSeq2 on 2 conditions only - is there a way to do more than 2 and how?
     
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    timtower Administrator Administrator Moderator

    @Fabian15 And this is Bukkit related how?
     
    davidclue likes this.
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